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SRX12150631: GSM5575259: Conidia_1; Mus musculus; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 23.9M spots, 1.2G bases, 668Mb downloads

Submitted by: NCBI (GEO)
Study: RNA-seq of limmmunocompetent mice in response to Aspergillus fumigatus conidia and hyphae
show Abstracthide Abstract
We bulit a pulmonary aspergillosis model in immunocompetent mice. Mice were inoculated intratracheally with 50 µL suspension of conidia , hyphal fragments or normal saline, respectively, after anesthesia. Lungs from were harvested and ground for RNA extraction 24 hours after fungal inoculation. The result of RNA-seq indicated both conidia and hyphae can activate a series of immunologically relevant pathways and these pathways were much more strongly activated by hyphae. Hyphae could promote Th2 cell differentiation and suppress Th1 cell differentiation. Both hyphae and conidia could activate Th17 cell differentiation. Overall design: RNA profile of pulmonary aspergillosis in response to different states of A. fumigatus
Sample: Conidia_1
SAMN21398419 • SRS10129731 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Lungs were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent. High-throughput sequencing was performed at the BGISEQ platform. Qualified RNA samples were digested with DNA I enzyme and then poly (A) containing mRNA was purified using Oligo (dT) containing beads. Next, mRNA was fragmented and reverse transcribed to first- and second-strand. Double-strand DNA ends were repaired and modified. Then DNA was amplified via PCR and the products were thermally denatured into single-stranded and cyclized. After rolling circle amplification and quality control, high-throughput sequencing was performed at the BGISEQ platform.
Experiment attributes:
GEO Accession: GSM5575259
Links:
Runs: 1 run, 23.9M spots, 1.2G bases, 668Mb
Run# of Spots# of BasesSizePublished
SRR1585948623,852,7041.2G668Mb2021-09-16

ID:
16070400

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