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SRX12172337: GSM5576995: a.WT1; Mus musculus; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2000) runs: 74.5M spots, 15G bases, 5.4Gb downloads

Submitted by: NCBI (GEO)
Study: Effect of Notch4 deletion on pancreatic tumorigenesis in mice
show Abstracthide Abstract
The gene expression of N4-/-PKC (Notch4 -/-; p16fl/fl;LSL-KrasG12D;p48-Cre) mouse pancreatic tumor cell lines was compared to that of PKC ( p16fl/fl; LSL-KrasG12D;p48-Cre) mouse pancreatic tumor cell lines Overall design: A. PKC mice (n=3) B. N4-/-PKC mice (n=2)
Sample: a.WT1
SAMN21418637 • SRS10150657 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA of PKC and N4-/-PKC pancreatic tumor cell lines were extracted using the miRNeasy Mini kit (Qiagen, Venlo, Netherlands), quantified by spectrophotometry (Ultraspec2100; Amersham Pharmacia Biotech, Cambridge, UK) and reversed-transcribed with SuperScriptⅢ Reverse Transcriptase (Invitrogen, MA, USA) according to the manufacturer's protocol. The quality of purified RNA samples was determined using a Bioanalyzer 2100 (Agilent) with an RNA Pico kit. RNAs with RNA Integrity Number (RIN) values greater than 8.0 were used to generate sequencing libraries. Illumina Truseq RNA Sample Prep v2 using the LT protocol.
Experiment attributes:
GEO Accession: GSM5576995
Links:
Runs: 2 runs, 74.5M spots, 15G bases, 5.4Gb
Run# of Spots# of BasesSizePublished
SRR1588146337,183,3327.5G2.7Gb2023-03-20
SRR1588146437,278,9457.5G2.7Gb2023-03-20

ID:
16092110

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