RNA-seq of mus musculus: adult bone marrow stromal cells - SRA

Links from BioSample

SRX12204840: RNA-seq of mus musculus: adult bone marrow stromal cells
1 BGISEQ (BGISEQ-500) run: 53.8M spots, 5.4G bases, 3.1Gb downloads

Design: Cell suspension from digested leg bones were pooled together with flushed BM fraction after irradiation. The RNA was extracted using RNeasy Mini Kit (QIAGEN) and DNA was removed using RNase-Free DNase Set (QIAGEN). RNA-seq was performed by BGI Genomics (Hong Kong). Library selection: poly-A selection method.

Submitted by: Children's Hospital of Philadelphia

Study: RNA-seq to analyze how Sbds deletion affects BM niche gene expression at baseline and following TBI

PRJNA763892 • SRP337441 • All experiments • All runs

show Abstracthide Abstract

To define mechanisms by which SBDS deficiency in bone marrow (BM) niches impairs donor hematopoietic stem cell engraftment after transplantation, we performed RNA-seq on the BM stromal cells from Sbds-deficient mice versus control mice at 24 hours after myeloablative total body irradiation (TBI) and at baseline.

Sample: Control TBI

SAMN21461618 • SRS10181138 • All experiments • All runs

Organism: Mus musculus

Library:

Name: HK500MUSwmzEAADRAAPEI-542

Instrument: BGISEQ-500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: other

Layout: PAIRED

Runs: 1 run, 53.8M spots, 5.4G bases, 3.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR15914592	53,767,136	5.4G	3.1Gb	2021-09-16

ID:: 16124613

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioSample

Supplemental Content

Related information

Recent activity