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SRX12374186: GSM5598184: Paired gli1 RNAi males repeat2; Schistosoma mansoni; RNA-Seq
1 ILLUMINA (NextSeq 550) run: 16.7M spots, 1.3G bases, 476.4Mb downloads

Submitted by: NCBI (GEO)
Study: A male-derived non-ribosomal peptide pheromone controls female schistosome development
show Abstracthide Abstract
gli1 is a gene in the male S. mansoni required for female sexual development. As a putative transcription factor, RNAseq comparing pairs with gli1 knocked-down or control males was performed to look for the genes which are trancriptionally regulated by gli1. sm-nrps was one of the essential candidate discovered in this analysis that has been characterized in the same publication, revealing a pheromone directed novel mechanism of female schistosome sexual development. Overall design: RNA sequencing of virgin male/female schistosome parasites after 3 days of pairing or no-contact co-culture under the condtion of pairing with gli RNAi males or control RNAi males.
Sample: Paired gli1 RNAi males repeat2
SAMN21855760 • SRS10345104 • All experiments • All runs
Library:
Instrument: NextSeq 550
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Sexes were separated and flash frozen in liquid N2 and stored in 200 𝜇L Trziol at -80℃ until all three biological replicates were collected for the sequencing. Total RNA was extracted and purified using a Zymo Direct-zol RNA miniprep kit before Illumina sequencing. RNA libraries were prepared for sequencing using Illumina Truseq stranded mRNA library preparation kit. The total RNA input amount per each sample was 500ng -1 ug; 94C for 6 minutes was used for mRNA fragmentation; the UMI adapters synthesized by IDT were used in the ligation step; and PCR amplification using 11-13 cycles to generate the final cDNA libraries.
Experiment attributes:
GEO Accession: GSM5598184
Links:
Runs: 1 run, 16.7M spots, 1.3G bases, 476.4Mb
Run# of Spots# of BasesSizePublished
SRR1608776116,692,9611.3G476.4Mb2021-10-05

ID:
16570557

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