U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX048560: Whole genome sequencing
1 LS454 (454 GS FLX Titanium) run: 662,565 spots, 384.5M bases, 801.6Mb downloads

Design: A titanium fragment library was made from 5ug of S. cryophilus OY26 genomic DNA and sequenced on a single 454 run using titanium chemistry. This is 1 of 2 shotgun reads containing 662,578 fragments.
Submitted by: (SIMR)
Study: Schizosaccharomyces cryophilus OY26 WGS sequencing
show Abstracthide Abstract
Before the official species description of <i>Schizosaccharomyces cryophilus</i> OY26 this strain was known as <i>Schizosaccharomyces</i> sp. strain OY26. The sequenced stain is a type strain and has been deposited at NRRL, Agricultural Research Service Culture Collection as NRRL Y-48691, at the Centraal Bureau voor Schimmelcultures as CBS 11777 and at NBRC, NITE Biological Resource Center as NBRC 106824. This strain was isolated as a contaminant of the <i>Schizosaccharomyces octosporus</i> strain CBS 7191. Genomic DNA from the <i>S. cryophilus</i> strain was submitted to 454 Life Sciences for whole-genome sequencing. A titanium fragment library was generated from 5 mg genomic DNA and sequenced on a single 454 run using titanium chemistry. A 3K long-tag paired-end (LTPE) library was generated in parallel from the same amount of genomic DNA and sequenced on half of an FLX run. Approximately 1.3 million high-quality reads of 400 bp were generated from the titanium run and 700 000 reads were generated from the LTPE FLX run. Quality-filtered sequences from the wholegenome shotgun fragment library and LTPE library were assembled using the 454 Newbler Assembler.
Sample: Shotgun sequence reads (1/2)
SAMN00222478 • SRS178743 • All experiments • All runs
Library:
Name: S. cryophilus OY26
Instrument: 454 GS FLX Titanium
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: SINGLE
Spot descriptor:
         forward

Runs: 1 run, 662,565 spots, 384.5M bases, 801.6Mb
Run# of Spots# of BasesSizePublished
SRR128266662,565384.5M801.6Mb2011-03-23

ID:
57708

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...