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DRX311660: NextSeq 500 sequencing of SAMD00409876
1 ILLUMINA (NextSeq 500) run: 54.9M spots, 1.6G bases, 409.5Mb downloads

Submitted by: KITASATO
Study: SmallRNA-seq analysis of Xenopus germline
show Abstracthide Abstract
Ovaries from adult female frogs were cut into small pieces, flash-frozen in liquid nitrogen, and then mushed in a frozen. Testes from adult male frogs were flash-frozen in liquid nitrogen. Small RNAs were purified using small RNA isolation kit (ISOGEN II, Nippon gene, Japan) by the manufacturer's protocol except for the percentage change of ethanol form 75 to 90. piRNAs were separated on a 15% polyacrylamide TBE-Urea gel, and 20 - 50 bases were excised from the gel. Then they were recovered by small-RNA PAGE recovery kit (Zymo research, California, USA). Sequencing library was prepared using Illumina v1.9 library protocol. Adapter sequences were trimmed using trim-galore, trimmomatic (SE SLIDINGWINDOW:1:10 MINLEN:20 SLIDINGWINDOW:10:20 MINLEN:20, SE LEADING:20 TRAILING:20 SLIDINGWINDOW:10:20 MINLEN:20) and cutadapt (-b "A{10}" -b "G{10}" -b "C{10}" -b "T{10}").
Sample: Ovary of Xenopus laevis
SAMD00409876 • DRS207471 • All experiments • All runs
Organism: Xenopus laevis
Library:
Name: XL_ovary
Instrument: NextSeq 500
Strategy: miRNA-Seq
Source: OTHER
Selection: other
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 54.9M spots, 1.6G bases, 409.5Mb
Run# of Spots# of BasesSizePublished
DRR32233054,918,5931.6G409.5Mb2021-10-20

ID:
17253275

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