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SRX12729149: GSM5646478: ATAC-seq in sea urchin whole embryos at 48 hpf, replicate 2; Strongylocentrotus purpuratus; ATAC-seq
1 ILLUMINA (Illumina HiSeq 4000) run: 34.8M spots, 3.4G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization
PRJNA773506 • SRP342602 • All experiments • All runs
show Abstracthide Abstract
We identified cis-regulatory elements based on their dynamic chromatin accessibility during the gastrula-larva stages of sea urchin and sea star and studied their evolution in these echinoderm species Overall design: ATAC-seq assays in wild-type sea urchin embryos, at 48 hpf developmental stage
Sample: ATAC-seq in sea urchin whole embryos at 48 hpf, replicate 2
SAMN22487647 • SRS10677504 • All experiments • All runs
Organism: Strongylocentrotus purpuratus
Library:
Instrument: Illumina HiSeq 4000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Wild type embryos were lysed Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) experiments were performed as described in Buenrostro et al., 2015. Curr. Protoc. Mol. Biol. 109, 21.29.1-9. doi:10.1002/0471142727.mb2129s109
Experiment attributes:
GEO Accession: GSM5646478
Links:
Runs: 1 run, 34.8M spots, 3.4G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR1652653934,752,4003.4G1.2Gb2021-10-25

ID:
17330061

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