GSM5667500: TF ChIP-seq from HepG2 (ENCLB882KYX); Homo sapiens; ChIP-... - SRA

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SRX13006474: GSM5667500: TF ChIP-seq from HepG2 (ENCLB882KYX); Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 34.4M spots, 1.7G bases, 591.5Mb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

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Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS953ZAW

SAMN22819157 • SRS10946006 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: SINGLE

Construction protocol: pipeline protocol: https://www.encodeproject.org/documents/efac5344-6834-4e12-b971-94994d992e86/@@download/attachment/ChIP-seq_Mapping_Pipeline_Overview.pdf pipeline protocol: https://www.encodeproject.org/documents/d00ffce2-e72c-44d7-a71f-73fd163c2426/@@download/attachment/ChIP-seq_pipeline_overview.pdf extraction protocol: https://www.encodeproject.org/documents/73c95206-fc02-41ea-93e0-a929a6939aaf/@@download/attachment/ChIP-seq%20protocol%2C%20ENCODE4%2C%20Myers%20Lab.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Experiment attributes:

GEO Accession: GSM5667500

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 34.4M spots, 1.7G bases, 591.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR16808605	34,388,684	1.7G	591.5Mb	2021-11-23

ID:: 17710447

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