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SRX343519: RNA-Seq (Total RNA) Fetal Spleen
1 ILLUMINA (Illumina HiSeq 2000) run: 84.7M spots, 3G bases, 2.1Gb downloads

Design: RNA-Seq (Total RNA) Fetal Spleen
Submitted by: Gene Expression Omnibus (GEO)
Study: University of Washington Human Reference Epigenome Mapping Project
show Abstracthide Abstract
Study of chromatin accessibility
Sample: Fetal Spleen primary tissue, day 120
SAMN02340052 • SRS475183 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: lib-RNA.RS19457
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Illumina TruSeq RNA PART# 15008136 REVISION A
Spot descriptor:
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Experiment attributes: (show all 17 attributes...) (hide...)
EXPERIMENT_TYPE: mRNA-Seq
EXTRACTION_PROTOCOL: Ambion mirVana miRNA isolation kit
EXTRACTION_PROTOCOL_MRNA_ENRICHMENT: Part of Library Prep, Truseq RNA-Seq Sample Prep K (show full text...)(hide...)
Part of Library Prep, Truseq RNA-Seq Sample Prep Kit
RNA_PREPARATION_INITIAL_RNA_QNTY: 1ug
RNA_PREPARATION_REVERSE_TRANSCRIPTION_PRIMER_SEQUENCE: Random Primers(hexamers)
RNA_PREPARATION_REVERSE_TRANSCRIPTION_PROTOCOL: TruSeq RNA
LIBRARY_GENERATION_PCR_TEMPLATE: cDNA
LIBRARY_FRAGMENTATION: Part of Library Prep, Truseq RNA-Seq Sample Prep K (show full text...)(hide...)
Part of Library Prep, Truseq RNA-Seq Sample Prep Kit
LIBRARY_FRAGMENT_SIZE_RANGE: 120-200bp
LIBRARY_GENERATION_PCR_POLYMERASE_TYPE: Proprietary
LIBRARY_GENERATION_PCR_THERMOCYCLING_PROGRAM: 98C 30 sec, 15 cycles of 98C 10 sec, 65C 30 sec, 7 (show full text...)(hide...)
98C 30 sec, 15 cycles of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold
LIBRARY_GENERATION_PCR_NUMBER_CYCLES: 15
LIBRARY_GENERATION_PCR_F_PRIMER_SEQUENCE: Proprietary
LIBRARY_GENERATION_PCR_R_PRIMER_SEQUENCE: Proprietary
LIBRARY_GENERATION_PCR_PRIMER_CONC: Proprietary
LIBRARY_GENERATION_PCR_PRODUCT_ISOLATION_PROTOCOL: Part of Library Prep, Truseq RNA-Seq Sample Prep K (show full text...)(hide...)
Part of Library Prep, Truseq RNA-Seq Sample Prep Kit
GEO Accession: GSM1220585
Pipeline: show...hide...
NameStepPrev StepProgramVersion
BASE_CALLS1NILIllumina RTA1.12.4.2
QUALITY_SCORES21Illumina RTA1.12.4.2
Links:
External link:
External link:
Runs: 1 run, 84.7M spots, 3G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR98046384,672,8263G2.1Gb2013-09-12

ID:
485979

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