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SRX13237632: GSM5704686: Ferret lung tissues - aged - control - 2; Mustela putorius furo; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 85.8M spots, 17.3G bases, 5.2Gb downloads

Submitted by: NCBI (GEO)
Study: Age-dependent pathogenic characteristics of SARS-CoV-2 infection in ferrets
show Abstracthide Abstract
While the seroprevalence of SARS-CoV-2 in healthy people does not differ significantly among age groups, those aged 65?years or older exhibit strikingly higher COVID-19 mortality compared to younger individuals. To further understand differing COVID-19 manifestations in patients of different ages, three age groups of ferrets are infected with SARS-CoV-2. Although SARS-CoV-2 is isolated from all ferrets regardless of age, aged ferrets (=3 years old) shows higher viral loads, longer nasal virus shedding, and more severe lung inflammatory cell infiltration and clinical symptoms compared to juvenile (=6 months) and young adult (1-2 years) groups. Furthermore, direct contact ferrets co-housed with the virus-infected aged group shed more virus than direct-contact ferrets co-housed with virus-infected juvenile or young adult ferrets. Transcriptome analysis of aged ferret lungs reveals strong enrichment of gene sets related to type I interferon, activated T cells, and M1 macrophage responses, mimicking the gene expression profile of severe COVID-19 patients. Thus, SARS-CoV-2-infected aged ferrets highly recapitulate COVID-19 patients with severe symptoms and are useful for understanding age-associated infection, transmission, and pathogenesis of SARS-CoV-2. Overall design: RNA sequencing analysis of lung tissues from the juvenile, young adult, and aged ferret groups at pre-infection, 2, and 5 day post infection. (n = 3 per each group)Retinal mRNA profiles of 21-day old wild type (WT) and Nrl-/- mice
Sample: Ferret lung tissues - aged - control - 2
SAMN23457245 • SRS11162149 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated using TRIzol reagent (Invitrogen) according to the manufacturer‟s instructions. Extracted RNAs were processed using the TruSeq Stranded mRNA Sample Prep Kit (Illumina) according to the manufacturer‟s instructions.
Experiment attributes:
GEO Accession: GSM5704686
Links:
Runs: 1 run, 85.8M spots, 17.3G bases, 5.2Gb
Run# of Spots# of BasesSizePublished
SRR1704780185,843,37117.3G5.2Gb2022-01-01

ID:
18103312

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