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DRX340640: HiSeq X Ten paired end sequencing of SAMD00449214
1 ILLUMINA (HiSeq X Ten) run: 18.3M spots, 5.5G bases, 2.1Gb downloads

Submitted by: UTSUNOMIYA
Study: Evolutionary conserved role of hps1 in melanin production and blood coagulation
show Abstracthide Abstract
Hermansky-Pudlak syndrome (HPS) is an autosomal recessive disease characterized by albinism, visual impairment, and blood platelet dysfunction. One of the genes responsible for HPS, hps1, regulates organelle biogenesis and thus plays important roles in melanin production, blood clotting, and the other organelle-related functions in humans and mice. However, the function of hps1 in other species remains poorly understood. In this study, we discovered albino medaka fish during the maintenance of a wild-derived population and identified hps1 as the responsible gene using positional cloning. In addition to the specific absence of melanophore pigmentation, the hps1 mutant showed reduced blood coagulation, suggesting that hps1 is involved in clotting caused by both mammalian platelets and fish thrombocytes. Together, the findings of our study demonstrate that hps1 has an evolutionarily conserved role in melanin production and blood coagulation. In addition, our study presents a useful vertebrate model for understanding the molecular mechanisms of HPS.
Sample: Oryzias latipes black (hps1+/+) 2
SAMD00449214 • DRS234741 • All experiments • All runs
Organism: Oryzias latipes
Library:
Name: black-2
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: KAPA Stranded mRNA-Seq Kit
Spot descriptor:
forward76  reverse

Runs: 1 run, 18.3M spots, 5.5G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
DRR35472918,292,8245.5G2.1Gb2022-04-09

ID:
21171634

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