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SRX15493982: De novo transcriptome dataset of gene expression in Durio zibethinus during the infection of Phytophthora palmivora
1 DNBSEQ (DNBSEQ-G400) run: 65.7M spots, 6.6G bases, 3.9Gb downloads

Design: Total RNA of P. palmivora were isolated from infected D. zibethinus leave using Rneasy Plant Mini kit (Qiagen). RNA is converted to cDNA by reverse transcription. Fragments are converted into the library by ligation to sequencing adapters containing specific sequences by Illumina. Next step involve clonal amplification of the library through cluster generation and finally generating sequence.
Submitted by: International Islamic University Malaysia
Study: De novo transcriptome dataset of gene expression in Durio zibethinus during the infection of Phytophthora palmivora
show Abstracthide Abstract
Phytophthora palmivora is a notorious plant pathogenic oomycete that caused fatal diseases in various tropical perennial crops. Over time, extensive literatures have developed on the destructive diseases caused by P. palmivora in Durio zibethinus (durian) including stem canker, root rot, leaf blight and fruit rot. Therefore, sequencing and analyzing genes that are involved during the infection of P. palmivora in durian will give a comprehensive understanding about the infection mechanism and the expression of pathogenicity-related genes. The transcriptome dataset will provide a platform to develop new control measures through molecular technology to combat P. palmivora diseases in durian, increasing durian production in Malaysia and other durian-producing countries. The potential new control measures can also be a great help for the farmers to minimize their exposure towards hazardous fungicides.
Sample: Infected sample inoculated with Phytophthora palmivora (3 day post inoculation)
SAMN27925919 • SRS13209085 • All experiments • All runs
Library:
Name: Ppal3dpi_paired
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 65.7M spots, 6.6G bases, 3.9Gb
Run# of Spots# of BasesSizePublished
SRR1944080165,686,7286.6G3.9Gb2022-05-29

ID:
22074686

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