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DRX365714: Illumina HiSeq 2500 paired end sequencing of SAMD00495047
1 ILLUMINA (Illumina HiSeq 2500) run: 2.8M spots, 841.5M bases, 319.1Mb downloads

Submitted by: NAGOYAC_U
Study: A genome-wide CRISPR screen for herpes simplex virus type-1 host factors reveals PAPS synthase as a key factor for heparan sulfate biosynthesis
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Herpes simplex virus type 1 (HSV-1) is a ubiquitous pathogen that causes various diseases in humans, ranging from common mucocutaneous lesions to severe life-threatening encephalitis. Therefore, to identify the host factors for HSV-1 infections, we performed a human genome-wide CRISPR screen using near-haploid HAP1 cells, in which gene knockout (KO) could be efficiently achieved. Along with several already known host factors, we identified 3'-phosphoadenosine 5'-phosphosulfate synthase 1 (PAPSS1) as a novel factor for HSV-1 infections. The KO of PAPSS1 in HAP1 cells reduced heparan sulfate (HepS) expression, consequently diminishing the binding of HSV-1 and several other HepS-dependent viruses (such as HSV-2, hepatitis B virus, and a human seasonal coronavirus). Hence, our findings provide new insights into the host factor requirements for HSV-1 infection and HepS biosynthesis.
Sample: CRISPR guide sequencing of control library B replicate 2
SAMD00495047 • DRS242556 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Construction protocol: CRISPR guide PCR
Spot descriptor:
forward152  reverse

Runs: 1 run, 2.8M spots, 841.5M bases, 319.1Mb
Run# of Spots# of BasesSizePublished
DRR3798262,786,326841.5M319.1Mb2022-06-03

ID:
22195232

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