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DRX367182: Ion GeneStudio S5 sequencing of SAMD00496954
1 ION_TORRENT (Ion GeneStudio S5) run: 20.5M spots, 2.6G bases, 1.6Gb downloads

Submitted by: KURUME_U
Study: Mismatch repair proteins expression and tumor-infiltrating T-cells in colorectal cancer
show Abstracthide Abstract
Microsatellite instability (MSI) and tumor mutational burden (TMB) are indicators of the tumor mutational load, which can lead to immune cell recruitment. By contrast, the number of tumor-infiltrating T cells (TITs) is indicative of the host immune response to tumor cells. The present study evaluated if the expression of mismatch repair (MMR) proteins can be used as a precise tool to assess immunogenicity in the tumor microenvironment, which was performed using TIT (counting CD3+ and CD8+ cells in a tumor ) analyses and TMB tests (the total number of variants found in the DNA of cancer cells)
Sample: colorectal_cancer_8
SAMD00496954 • DRS243693 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Patient_8
Instrument: Ion GeneStudio S5
Strategy: Targeted-Capture
Source: METAGENOMIC
Selection: unspecified
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 20.5M spots, 2.6G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
DRR38129820,505,1332.6G1.6Gb2022-06-15

ID:
22353354

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