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SRX696159: Whole genome shotgun sequencing of Salmonella enterica str. CFSAN023448 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 874,097 spots, 411.4M bases, 262.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Arizona State Public Health Laboratory
PRJNA183847 • SRP028894 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02989107 • SRS697255 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica str. CFSAN023448 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. CFSAN023448.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 874,097 spots, 411.4M bases, 262.4Mb
Run# of Spots# of BasesSizePublished
SRR1569721874,097411.4M262.4Mb2014-09-08

ID:
980588

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