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SRX17969650: GSM6662007: Control liver, 30M, rep2; Dasypus novemcinctus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 38.2M spots, 11.4G bases, 4.5Gb downloads

External Id: GSM6662007_r1
Submitted by: Arraystar
Study: Promoting in vivo Adult Liver Organ Growth with Bacteria without Fibrosis and Tumorigenesis
show Abstracthide Abstract
Strategies that promote functional organ growth with minimal adverse effects are the ultimate goal of regenerative medicine but no single approach is currently available for organ level repair. Here, using an evolutionary adapted in vivo infection model - Mycobacterium leprae, with host cell reprogramming ability and its natural animal host, the nine-banded armadillo (Dasypus novemcinctus) that harbor bacteria in the highly regenerative liver - we present an in vivo model for promoting adult liver growth at organ level without adverse effects. Experimentally infected armadillos harboring bacteria in the liver, but not infection-resistant or drug-treated animals, showed a significantly increased total liver: body weight ratio, indicative of bacterial-driven liver organ growth in living animals. The machine-learning approach revealed an increase in healthy liver lobule number with a proportionate expansion of the hepatocyte mass with integrating vasculature and biliary networks responsible for functional liver growth. Intriguingly, infected enlarged livers show intact microarchitecture but without evidence of hepatocellular damage, fibrosis/scarring or tumorigenesis. Reactivation of armadillo liver progenitor and developmental genes/proteins, as well as upregulation of growth-, metabolism- and differentiation-associated markers with minimal change in oncogenes or tumor suppressor genes, suggests that bacteria have adapted dynamic regenerative, homeostasis and reprogramming mechanisms to promote de novo organogenesis while maintaining tissue integrity and tumor preventive strategies for host-dependent bacterial propagation. Thus, our model may facilitate the unravelling of in vivo endogenous regenerative pathways that effectively re-engage liver organ growth, with broad implications. Overall design: Triplicate RNA samples isolated from 24-month ML-infected, 30-month ML-infected and two control Armadillo livers were collected and used for paired-end sequencing. This was used for differential gene expression analysis between infected and control samples.
Sample: Control liver, 30M, rep2
SAMN31390920 • SRS15485966 • All experiments • All runs
Library:
Name: GSM6662007
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: After storage in RNAlater, total RNA was extracted using TRIzol and chloroform/isopropanol. Total RNA was resuspended in distilled, Rnase-free water and quantified using a Nanodrop ND-1000 Spectrophotometer. 1-2 μg total RNA was used to prepare the sequencing libraries. Library preparation involved oligo (dT) magnetic bead mRNA enrichment, highly strand-specific dUTP method using KAPA Stranded RNA-Seq Library Prep Kit, library size distribution and yield QC with Agilent 2100 Bioanalyzer and by absolute quantification qPCR.
Runs: 1 run, 38.2M spots, 11.4G bases, 4.5Gb
Run# of Spots# of BasesSizePublished
SRR2198704538,163,76311.4G4.5Gb2022-11-25

ID:
24920721

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