Whole genome shotgun sequencing of Escherichia coli subsp. serovar O1... - SRA

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SRX973548: Whole genome shotgun sequencing of Escherichia coli subsp. serovar O157 str. VA-WGS-00433 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 621,877 spots, 298.4M bases, 171.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Virginia - Division of Consolidated Lab. Services

PRJNA251752 • SRP049349 • All experiments • All runs

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Whole genome sequencing of cultured E.coli as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.

Sample:

SAMN03431328 • SRS888783 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli str. VA-WGS-00433 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli subsp. serovar O157 str. VA-WGS-00433.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 621,877 spots, 298.4M bases, 171.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1946931	621,877	298.4M	171.2Mb	2015-03-30

ID:: 1415518

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