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SRX1521833: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 738,724 spots, 252.6M bases, 140.1Mb downloads

External Id: EXT00156478
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: New Mexico State University, Food Safety Laboratory
PRJNA292570 • SRP065993 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN03997205 • SRS1239853 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 738,724 spots, 252.6M bases, 140.1Mb
Run# of Spots# of BasesSizePublished
SRR3091358738,724252.6M140.1Mb2016-01-07

ID:
2151623

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