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SRX1280426: Xenoturbella profunda transcriptome
1 ILLUMINA (Illumina MiSeq) run: 15.3M spots, 4.1G bases, 2.2Gb downloads

Submitted by: University of California San Diego
Study: Xenoturbella profundus Transcriptome or Gene expression
show Abstracthide Abstract
Here we describe four new species of Xenoturbella from deep waters of the eastern Pacific Ocean. One species, found near a whalefall at 600 m depth in Monterey Canyon (California), is similar to the Swedish Xenoturbella at 2.5 cm in length. The second species is much larger (over 20 cm), and was found in a vesicomyid clam field at ~3000 m depth in Monterey Canyon and near a chemosynthetic habitat at ~1700 m in the Gulf of California, Mexico. The third species, also large, was also found at the same site in the Gulf of California at ~1700 m. The fourth species, reaching 15 cm in length, was found at over 3700 meters depth near a hydrothermal vent in the Gulf of California. Analysis of whole mitochondrial genomes places the three new deep sea sea species as a clade that is sister to the smaller and more shallow-water Xenoturbella species. Phylogenomic analysis of transcriptomic data for one of the new Xenoturbella species supports the placement of it with Acoelomorpha and them both as sister to Nephrozoa.
Sample:
SAMN04088069 • SRS1084416 • All experiments • All runs
Library:
Name: Xe_p
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Spot descriptor:
forward151  reverse

Pipeline: show...hide...
ProgramVersion
Agalma0.5.0
Runs: 1 run, 15.3M spots, 4.1G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR250094015,312,5914.1G2.2Gb2016-05-06

ID:
1829943

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