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SRX1480903: Whole genome shotgun sequencing of Shigella boydii by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 619.7M bases, 352.9Mb downloads

External Id: EXT00152550
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration - CFSAN
PRJNA273284 • SRP055205 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.
Sample:
SAMN04316453 • SRS1206230 • All experiments • All runs
Organism: Shigella boydii
Library:
Name: Shigella boydii Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Shigella boydii.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.4M spots, 619.7M bases, 352.9Mb
Run# of Spots# of BasesSizePublished
SRR29941911,384,825619.7M352.9Mb2015-12-14

ID:
2091245

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