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ERX1270228: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 796,120 spots, 459.1M bases, 265.7Mb downloads

Submitted by: MRC-University of Glasgow Centre for Virus Research (MRC-University of Glasgow Centre for Virus Researc)
Study: Genome sequence of canine herpesvirus
show Abstracthide Abstract
Canine herpesvirus is a widespread alphaherpesvirus that causes a fatal haemorrhagic disease of neonatal puppies. We have used high-throughput methods to determine the genome sequences of three viral strains (0194, V777 and V1154) isolated in the United Kingdom between 1985 and 2000. The sequences are very closely related to each other. The canine herpesvirus genome is estimated to be 125 kbp in size and consists of a unique long sequence (97.5 kbp) and a unique short sequence (7.7 kbp) that are each flanked by terminal and internal inverted repeats (38 bp and 10.0 kbp, respectively). The overall nucleotide composition is 31.6% G+C, which is by far the lowest among the completely sequenced alphaherpesviruses. The genome contains 76 open reading frames predicted to encode functional proteins, all of which have counterparts in other alphaherpesviruses. The availability of the sequences will facilitate future research on the diagnosis and treatment of canine herpesvirus-associated disease.
Sample: Canid herpesvirus 1
SAMEA3719302 • ERS1026451 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina MiSeq
Strategy: WGS
Source: OTHER
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 796,120 spots, 459.1M bases, 265.7Mb
Run# of Spots# of BasesSizePublished
ERR1197969796,120459.1M265.7Mb2016-04-02

ID:
2403681

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