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SRX1948684: GSM2232959: Glucose 3; Trichoderma reesei; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 13.4M spots, 3.3G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: Transcription analysis of recombinant Trichoderma_reesei strains reveals the molecular basis for fermentation of glucose and xylose
PRJNA329076 • SRP078496 • All experiments • All runs
show Abstracthide Abstract
In this study, the recombinant Trichoderma reesei strain HJ48 was employed to investigate the differences between anaerobic fermentation of xylose and glucose, through genome-wide transcription analysis. Analysis of the genes induced under fermentation condition has revealed novel features in T. reesei. Our results how that many genes related to ribosome were expressed more highly with xylose than with glucose in HJ48. Overall design: mRNA profiles of 4-day old of Trichoderma_reesei under fermentation of glucose and xylose condition were generated by deep sequencing, in triplicate, using Illumina HiSeq 2500.
Sample: Glucose 3
SAMN05390609 • SRS1563850 • All experiments • All runs
Organism: Trichoderma reesei
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Fungus was collected, and RNA was harvested using Trizol reagent. NEBNext® Ultra™ DNA Library Prep Kit for Illumina® was used with 3 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2232959
Links:
Runs: 1 run, 13.4M spots, 3.3G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR392207813,352,2803.3G1.3Gb2019-07-15

ID:
2805742

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