GSM2242960: anaerobic; Trichoderma reesei; RNA-Seq - SRA

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SRX1961997: GSM2242960: anaerobic; Trichoderma reesei; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 12.3M spots, 3.1G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)

Study: Comparative analysis of the Trichoderma reesei transcriptome during ethanol fermentation under anaerobic and aerobic condition

PRJNA330666 • SRP078985 • All experiments • All runs

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In this study, the recombinant Trichoderma reesei strain HJ48 was employed to investigate the differences between anaerobic and aerobic fermentation of glucose, through genome-wide transcription analysis.Analysis of the genes induced under fermentation condition has revealed novel features in T. reesei. Our results how that many genes related to ribosome were expressed more highly under aerobic condition in HJ48. Overall design: mRNA profiles of 4-day old of Trichoderma_reesei during ethanol fermentation under anaerobic and aerobic condition were generated by deep sequencing, in triplicate, using Illumina HiSeq 2500.

Sample: anaerobic

SAMN05420398 • SRS1571901 • All experiments • All runs

Organism: Trichoderma reesei

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Fungus was collected, and RNA was harvested using Trizol reagent. NEBNext® Ultra™ DNA Library Prep Kit for Illumina® was used with 3 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM2242960

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 12.3M spots, 3.1G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR3932674	12,297,405	3.1G	1.2Gb	2019-07-22

ID:: 2825631

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