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SRX2488256: GSM2454640: sp_systemic_w0.5_2; Solanum pennellii; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 15.5M spots, 3.1G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Regulatory divergence controlling wound-responsive gene expression in domesticated and wild tomatoes
show Abstracthide Abstract
We report the global wound-induced gene expression profile to compare the underlying transcriptional mechansims among S. lycopersicum, jasmonic acid–insensitive1 (jai1) and S. pennellii. Overall design: We examined the mRNA abundances in response to mechanical wounding in the leaves of S. lycopersicum, jai1 and S. pennellii.
Sample: sp_systemic_w0.5_2
SAMN06220410 • SRS1918226 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from the leaf tissues were extracted with RNeasy Plant Mini Kit (Qiagen, Germantown, MD, USA). The purified total RNA was used to construct a library for 100-bp paired-end sequencing following the Illumina protocol. TruSeq Stranded Total RNA Library Prep Kit was used for library preparation.
Experiment attributes:
GEO Accession: GSM2454640
Links:
Runs: 2 runs, 15.5M spots, 3.1G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR51719297,745,3881.5G966.1Mb2018-12-27
SRR51719307,716,4991.5G965.9Mb2018-12-27

ID:
3609308

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