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SRX4107028: Characterization of invasive pneumococcal isolates recovered from individuals in the United States through the Active Bacterial Core surveillance program
1 ILLUMINA (Illumina MiSeq) run: 541,884 spots, 272M bases, 142.1Mb downloads

Design: Shearing protocol - 500 bp protocol using sonication (Covaris) Library preparation kit - Ovation Rapid (Nugen) Index - dedicated read Library QC KAPA qPCR quantification (KAPA Biosystems) Sequencing instrument - Miseq Sequencing kit - Illumina MiSeq Sequencing kit v2 (500 cycles)
Submitted by: CDC
Study: Characterization of invasive pneumococcal isolates recovered from individuals in the United States through the Active Bacterial Core surveillance program
PRJNA284954 • SRP059723 • All experiments • All runs
show Abstracthide Abstract
These isolates were sequenced in order to deduce key strain parameters that are thought to be important for establishment of disease and success in carriage, including capsular serotypes, resistance features, and pilus determinants. Since these features are usually clonally associated, it was also useful to obtain multilocus sequence types.
Sample:
SAMN09231323 • SRS3322851 • All experiments • All runs
Organism: Streptococcus pneumoniae
Library:
Name: 20176183
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 541,884 spots, 272M bases, 142.1Mb
Run# of Spots# of BasesSizePublished
SRR7190454541,884272M142.1Mb2018-05-21

ID:
5592589

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