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SRX12299941: GSM5593742: Hippocampus_CE2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 19.8M spots, 5G bases, 2Gb downloads

Submitted by: NCBI (GEO)
Study: Hippocampal transcriptome analysis following environmental enrichment in a mouse model of fetal alcohol spectrum disorder
show Abstracthide Abstract
Maternal alcohol consumption during pregnancy results in a spectrum of lifelong behavioral and cognitive deficits collectively known as Fetal Alcohol Spectrum Disorders (FASD). FASD is a major health burden in most societies, there is no cure, and the molecular mechanism involved in its development is poorly understood. Human neurodevelopment is a continuum that extends over two decades after birth, with the potential to influence outcomes both prenatally and postnatally. Here, we experimentally investigate if positive postnatal environment enrichment ameliorates behavioral deficits caused by ethanol exposure. Furthermore, we assessed if this modulation is associated with alterations in hippocampal gene expression. To accomplish this, we used a binge model of ethanol exposure followed by environmental enrichment in C57BL/6 mice to generate four groups of animals: (1) control mice raised in standard conditions, (2) mice raised in enriched environments, (3) ethanol-exposed mice raised in standard conditions, and (4) ethanol-exposed mice raised in enriched environments. The environmental enrichment includes larger home cages with more individuals for social interaction, regular exposure to novel items, and access to running wheels. Ethanol exposure results in anxiety-like behavior (light-dark box) as well as learning and memory deficits (Barnes maze) that are at least partially ameliorated by enrichment. Environmental enrichment also improves performance for individuals not exposed to ethanol. Ethanol exposure induces changes in adult hippocampal gene expression (RNA-Seq). Some of the changes in adult hippocampal gene expression following ethanol exposure are reversed by environmental enrichment. The results offer a potential mechanism of behavioral deficits caused by ethanol exposure, including the potential for amelioration after an FASD diagnosis. Overall design: Hippocampal RNA profiles of adult mice that had been prenatally exposed to alcohol and/or postnatal environmental enrichment as well as non-exposed controls were generated by sequencing, using Illumina HiSeq.
Sample: Hippocampus_CE2
SAMN21555458 • SRS10273609 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Mice were sacrificed via carbon dioxide asphyxiation and cervical spinal dislocation. Hippocampus was dissected, snap-frozen in liquid nitrogen, and stored at -80°C. RNA was isolated using AllPrep DNA/RNA Mini Kit (Qiagen) and stored at -80°C. RNA libraries were prepared for sequencing using the Illumina TruSeq Stranded total RNA Library Preparation protocol with rRNA depletion using RiboZero Gold.
Experiment attributes:
GEO Accession: GSM5593742
Links:
Runs: 1 run, 19.8M spots, 5G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR1601300819,776,4025G2Gb2021-09-25

ID:
16219714

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