De novo assembly of Trichinella genotype T13 - SRA

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SRX7480188: De novo assembly of Trichinella genotype T13
1 ILLUMINA (Illumina MiSeq) run: 3.5M spots, 1.6G bases, 723.7Mb downloads

Design: Illumina Nextera XT library prep kit (transposon fragmentation followed by adapter ligation with 6 PCR cycle amplification)

Submitted by: USDA-Agricultural Research Service

Study: Trichinella sp. 17WV049-YT159 isolate:17WV049-YT159 Genome sequencing and assembly

PRJNA557433 • SRP239112 • All experiments • All runs

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This putative new lineage of Trichinella was discovered in a wolverine (Gulo gulo) while surveying samples for freeze-resistant strains of Trichinella. This isolate increases the global diversity of Trichinella by nearly 10% and helps to illuminate the dispersal and speciation of Trichinella over evolutionary timescales.

Sample:

SAMN12414064 • SRS5923783 • All experiments • All runs

Organism: Trichinella sp. 17WV049-YT159

Library:

Name: T13_YT159

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 3.5M spots, 1.6G bases, 723.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR10806442	3,501,517	1.6G	723.7Mb	2021-01-01

ID:: 9775382

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