Illumina Genome Analyzer IIx sequencing of SAMD00053939 - SRA

DRX057523: Illumina Genome Analyzer IIx sequencing of SAMD00053939
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 311,448 spots, 49.5M bases, 28.6Mb downloads

Submitted by: National Institute of Infectious Diseases - Japan (NIID)

Study: Identification of quasispecies in JC virus genome in patients with progressive multifocal leukoencephalopathy by deep sequencing

PRJDB4940 • DRP003284 • All experiments • All runs

show Abstracthide Abstract

JC virus (JCV) is a DNA virus and a causative agent of progressive multifocal leukoencephalopathy (PML) in immunodeficient patients. In the present study, we identified quasispecies in JCV genome in the 6 clinical samples of PML by a next generation sequencer. Sequence data of JCV DNA analyzed by NGS in this study were deposited.

Sample: 11-02

SAMD00053939 • DRS034199 • All experiments • All runs

Organism: JC polyomavirus

Library:

Name: JCV in PML

Instrument: Illumina Genome Analyzer IIx

Strategy: WGS

Source: GENOMIC

Selection: other

Layout: SINGLE

Construction protocol: Genomic DNA Sample Prep Kit Illumina

Spot descriptor:

1 forward

Runs: 1 run, 311,448 spots, 49.5M bases, 28.6Mb

Run	# of Spots	# of Bases	Size	Published
DRR063282	311,448	49.5M	28.6Mb	2016-10-05

ID:: 3246404

SRA

Sequence Read Archive

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