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SRX11958894: GSM5548040: DRy2 (Young, Rep 2); Danio rerio; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.1M spots, 1.5G bases, 832.4Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome analysis of young and old zebrafish ventricles
show Abstracthide Abstract
The gradual decline of tissue functionality is the main reason why humans suffer from age-related diseases. The prevalence for cardiovascular diseases increases with increasing age. In order to prevent age-related cardiac diseases, it is of importance to understand the respective age-associated risk factors. We have therefore compared the ventricular transcriptome of old and young hearts of the model organism zebrafish. We identified the immune system as activated in the old and found muscle organization to deteriorate upon aging. We show an accumulation of immune cells, mostly macrophages, in the old zebrafish ventricle. Overall design: 6 samples: ventricle of 3 young and 3 old individuals
Sample: DRy2 (Young, Rep 2)
SAMN21031066 • SRS9968288 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from zebrafish ventricles using Trizol. Preparation of libraries was done using NEBNext Ultra II directional RNA library preparation kit including enrichment of polyA RNAs using NEBNext Poly(A) mRNA Magnetic Isolation Module (NEB) according the manufacturer's description.
Experiment attributes:
GEO Accession: GSM5548040
Links:
Runs: 1 run, 29.1M spots, 1.5G bases, 832.4Mb
Run# of Spots# of BasesSizePublished
SRR1566200629,093,6001.5G832.4Mb2022-01-21

ID:
15877056

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