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SRX13222217: GSM5703329: Saline_GFP__SG10; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 57.7M spots, 5.9G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Histone H3 dopaminylation in ventral tegmental area underlies heroin-induced maladaptive plasticity
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Persistent transcriptional events in ventral tegmental area (VTA) and other reward relevant brain regions contribute to enduring behavioral adaptations that characterize substance use disorder (SUD). Recent data from our laboratory indicate that aberrant accumulation of the newly discovered histone post-translational modification (PTM), H3 dopaminylation at glutamine 5 (H3Q5dop), contributes significantly to cocaine-seeking behavior following prolonged periods of abstinence. It remained unclear, however, whether this modification is important for relapse vulnerability in the context of other drugs of abuse, such as opioids. Here, we showed that H3Q5dop plays a critical role in heroin-mediated transcriptional plasticity in midbrain. In rats undergoing abstinence from heroin self-administration (SA), we found acute and persistent accumulation of H3Q5dop in VTA. By attenuating H3Q5dop during abstinence, we both altered gene expression programs associated with heroin withdrawal and reduced heroin-primed reinstatement behavior. These findings thus establish an essential role for H3Q5dop, and its downstream transcriptional consequences, in opioid-induced plasticity in VTA. Overall design: To explore the functional consequences of H3Q5dop accumulation during heroin abstinence, we used a lentiviral vector that expresses the H3 variant, H3.3, with a glutamine-to-alanine substitution at position 5 (H3.3Q5A), which cannot be dopaminylated. This H3.3Q5A vector has previously been shown to strongly express the mutant H3.3Q5A protein in a nuclear-specific manner in adult neurons, resulting in downregulation of H3Q5dop. We delivered this H3.3QA vector into rodent VTA vs. H3.3 wildtype (WT) vs. empty vector controls in order to evaluate the impact of reducing H3Q5dop accumulation on gene expression programs during prolonged abstinence. After 10 d of heroin SA, rats were infected intra-VTA with one of the three viruses (on day 11), followed by a 30 d period of enforced abstinence to ensure maximal expression of viral transgenes. Following 30 d of forced abstinence, infected VTA tissues were microdissected and processed for RNA-seq.
Sample: Saline_GFP__SG10
SAMN23428341 • SRS11147734 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated using trizol-chloroform extraction followed by cleanup on the RNeasy Micro Kit (Qiagen) and processed as per manufacturer's instructions. libraries were prepared using the Illumina Truseq RNA Library Prep Kit V2 , according to the manufacturer's instructions.
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Runs: 1 run, 57.7M spots, 5.9G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1703233057,746,3765.9G1.9Gb2022-02-21

ID:
18085561

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