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SRX14834805: GSM6042121: PN5_Het_E3G_1; Mus musculus; Bisulfite-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 3.6M spots, 1.1G bases, 526.9Mb downloads

External Id: GSM6042121_r1
Submitted by: Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health
Study: Germ-cell specific eIF4E1b regulates maternal mRNA translation to ensure zygotic genome activation [NOMe-seq]
show Abstracthide Abstract
Translation of maternal mRNAs is detected before transcription of zygotic genes and is essential for mammalian embryo development. How certain maternal mRNAs are selected for translation instead of degradation and how this burst of translation affects zygotic genome activation remains unknown. Using gene-edited mice, we document that the oocyte-specific eukaryotic translation initiation factor 4E family member 1b (eIF4E1b) is the regulator of maternal mRNA expression that ensures subsequent reprogramming of the zygotic genome. In oocytes, eIF4E1b binds to transcripts encoding translation machinery proteins, chromatin remodelers and reprogramming factors to promote their translation in zygotes and protect them from degradation. The protein products are thought to establish an open chromatin landscape in one-cell zygotes to enable transcription of genes required for cleavage stage development. Our results define a program for rapid resetting of the zygotic epigenome that is regulated by maternal mRNA expression and provides new insights into the mammalian maternal-to-zygotic transition. Overall design: NOMe-seq of single Eif4e1b+/- or Eif4e1b-/- embryos collected at different developmental stages for joint profiling of chromatin accessibility and DNA methylation.
Sample: PN5_Het_E3G_1
SAMN27547872 • SRS12590028 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6042121
Instrument: Illumina HiSeq 4000
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Zygotes were collected from 6-8-week-old female mice after hormone simulation and mating. The zygotes were cultured in vitro to collect embryos at different developmental stages.The embryos were washed in PBS and transferred into acidic Tyrode's solution to remove zonae pellucidae. Single zona-free embryos were finally lysed and processed following the scNMT-seq protocol. Genomic DNA in the supernatant after capturing of poly-A RNA of each sample was processed following scNMT-Seq protocol to construct the single embryo bisulfite sequencing library.
Runs: 1 run, 3.6M spots, 1.1G bases, 526.9Mb
Run# of Spots# of BasesSizePublished
SRR187346983,551,9241.1G526.9Mb2023-06-07

ID:
21250972

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