Digital Genomic Footprinting assay of Fetal Intestine, Large - SRA

SRX204363: Digital Genomic Footprinting assay of Fetal Intestine, Large
3 ILLUMINA (Illumina HiSeq 2000) runs: 533.6M spots, 19.2G bases, 12.6Gb downloads

Design: Single read - Illumina

Submitted by: Gene Expression Omnibus (GEO)

Study: University of Washington Human Reference Epigenome Mapping Project

• SRP001371 • All experiments • All runs

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Study of chromatin accessibility

Sample: Generic sample from Homo sapiens

SAMN00254261 • SRS183516 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: DGF.DS17313

Instrument: Illumina HiSeq 2000

Strategy: DNase-Hypersensitivity

Source: GENOMIC

Selection: DNase

Layout: SINGLE

Spot descriptor:

1 forward

Experiment attributes: (show all 4 attributes...) (hide...)

EXPERIMENT_TYPE: Digital Genomic Footprinting

EXTRACTION_PROTOCOL: Qiagen minElut

DNASE_PROTOCOL: http://www.roadmapepigenomics.org/protocols/type/e (show full text...)(hide...)

http://www.roadmapepigenomics.org/protocols/type/experimental/

GEO Accession: GSM1036260

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
BASE_CALLS	1	NIL	RTA	v1.13
QUALITY_SCORES	2	1	RTA	v1.13

Links:

External link: EDACC Genboree Page

External link: GEO Web Link

Runs: 3 runs, 533.6M spots, 19.2G bases, 12.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR616669	4,965,547	178.8M	94.1Mb	2015-07-22
SRR616670	27,793,942	1G	607.1Mb	2015-07-22
SRR616671	500,879,643	18G	11.9Gb	2012-11-13

ID:: 275374

SRA

Sequence Read Archive

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