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SRX20755607: GSM7506217: 5_Scr-siRNA-Trained; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 24.7M spots, 6.6G bases, 2Gb downloads

External Id: GSM7506217_r1
Submitted by: VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY
Study: Monoubiquitination of histone H2B is a master regulator of the transcriptome during memory formation
show Abstracthide Abstract
We report a vital role for H2Bubi in active and repressive gene transcription during long-term memory formation. We found that fear conditioning increased or decreased the expression of 86 genes in the hippocampus one hour after training. Remarkably, siRNA knockdown of the H2Bubi ligase, Rnf20, abolished changes in all but one of these genes, Per1, suggesting a critical role for the H2Bubi epigenetic mark in active and repressive gene transcription during memory consolidation. Overall design: Male Sprague-Dawley rats were injected into the dorsal hippocampus CA1 region with Accell siRNA against Rnf20 or control (Scr-siRNA). Five days later animals were trained to contextual fear conditioning and the CA1 region (dorsal) was dissected, RNA collected via columns and used for RNA-seq analysis
Sample: 5_Scr-siRNA-Trained
SAMN35847084 • SRS18044184 • All experiments • All runs
Library:
Name: GSM7506217
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted usin Rneasy mini plus kit (Qiagen) Illumina TruSeq Stranded mRNA HT Sample Prep Kit, enriched by 14 cycles of PCR, validated using Agilent TapeStation and quantified by qPCR
Runs: 1 run, 24.7M spots, 6.6G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR2499973124,695,3716.6G2Gb2024-03-31

ID:
28186293

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