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SRX21167735: GSM7663934: 306_1_S93, silk gland_rep 2; Bombyx mori; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.1M spots, 8.8G bases, 2.6Gb downloads

External Id: GSM7663934_r1
Submitted by: School of Life and Sciences, Jiangsu University
Study: Identification of genes associated with the development of silk glands using transcriptomics in silkworm (Bombyx mori)
show Abstracthide Abstract
The silk gland development has a greater impact on silk yields in silkworms. Silk glands from three pure silkworm strains (A798, A306, and XH) with different silk gland weight phenotypes were compared using transcriptome, proteomics, and WGCNA. Five genes (BGIBMGA002524, BGIBMGA002629, BGIBMGA005659, BGIBMGA005711, and BGIBMGA010889) may be strongly associated with the growth of silk glands to be confirmed. These DEGs encoded alkylglycerol monooxygenase (AGMO), glucose dehydrogenase (GDH), zonadhesin (ZAN), odorant binding protein (OBPs), and ß-fructofuranosidase (INV), respectively. PCR and ELISA were used to verify the mRNA and protein expression of five genes in the silk glands and tissues of 18 silkworm strains. The GO results showed that four genes have higher levels of expression and participate in glycogen metabolism, fatty acid synthesis, and branched-chain amino acid metabolism, thus, promoting growth and silk proteins synthesis. Overall design: We selected three pure silkworm strains (A798, A306, and XH) with different silk gland weight phenotypes to investigate the silkworm's development-related genes. Then, we carried out the gene expression levels using the data obtained from the RNA-seq of three pure silkworm strains. Comparative gene expression profiling analysis of RNA-seq data for A306 against A798 and XH against A798.
Sample: 306_1_S93, silk gland_rep 2
SAMN36719188 • SRS18429299 • All experiments • All runs
Organism: Bombyx mori
Library:
Name: GSM7663934
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The total RNA was extracted from the silk gland using TRIzol (Invitrogen, Carlsbad, CA, USA). 1 µg of total RNA was used for the construction of sequencing libaries. The RNA libraries were validated according to the manufacturer's instructions.
Runs: 1 run, 29.1M spots, 8.8G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR2543352929,071,4418.8G2.6Gb2023-08-02

ID:
28603069

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