GSM7697404: CO_3_SUM149-Control; Homo sapiens; RNA-Seq - SRA

SRX21301768: GSM7697404: CO_3_SUM149-Control; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 27.3M spots, 8.2G bases, 2.5Gb downloads

External Id: GSM7697404_r1

Submitted by: Kaipparettu Lab, Department of Molecular and Human Genetics, Baylor College Of Medicine

Study: Metabolomic Rewiring in Endocrine Therapy-Resistant Estrogen Receptor Positive Breast Cancer

PRJNA1003494 • SRP454077 • All experiments • All runs

show Abstracthide Abstract

We report mRNA profiles of human breast cancer cell lines, SUM159 and SUM149,which are modulated fatty acid beta oxidation (FAO) pathway either pharmacologically using Etomoxir (ETX) or genetically (shRNA). The optimized data analysis workflows reported here should provide a framework for comparative investigations of expression profiles. Overall design: mRNA profiles of human breast cancer cell lines after modifying fatty acid beta oxidation (FAO)

Sample: CO_3_SUM149-Control

SAMN36892942 • SRS18550570 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: GSM7697404

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNA was extracted using RNeasy Mini Kit (Qiagen) RNA libraries were prepared for sequencing using standard Illumina protocols

Runs: 1 run, 27.3M spots, 8.2G bases, 2.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR25573107	27,338,481	8.2G	2.5Gb	2023-10-25

ID:: 28738900

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