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SRX21779515: GSM7782643: lib77919; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 2.3M spots, 271.2M bases, 92.7Mb downloads

External Id: GSM7782643_r1
Submitted by: Benaroya Research Institute
Study: Response to Treg therapy is linked to rate of ex vivo Treg expansion
show Abstracthide Abstract
Background: CD4+CD25hiCD127lo/-FOXP3+ regulatory T cells (Tregs) play a key role in preventing autoimmunity. In type 1 diabetes, adoptive transfer of autologous polyclonal Tregs has been shown to be safe in adults in Phase I clinical trials. Methods: We explore factors contributing to efficacy in autologous polyclonal expanded Tregs (expTregs) Phase 2 clinical trial in 111 children and adolescents with new-onset type 1 diabetes (Sanford/Lisata Therapeutics Trex Phase 2 clinical trial) randomized 1:1:1 high and low treatment to placebo. Cytometry, bulk and single cell RNA-seq were perfomed on selected expTregs and PBMC samples from subjects. Results: A single dose of expTreg therapy (1-24x106cells/kg) was safe but did not prevent the decline in residual beta cell function over one year compared to placebo (p=0.39), regardless of age, baseline C-peptide, or dose of expTregs. ExpTregs were highly activated and suppressive, and a transient increase of activated memory Tregs was detectable one week after infusion in the high dose cohort, suggesting effective transfer of expTregs. However, in vitro fold expansion on expTregs varied across subjects even when accounting for age. Lower fold expansion and its' associated gene signature was linked with better outcome, regardless of Treg dose. Conclusion: These results suggest that expTregs quantity alone does not alter outcome; instead, expTreg quality may be an important factor contributing to the efficacy of adoptive Treg therapy to prevent type 1 diabetes progression. Overall design: Children and adolescents with recent-onset T1D aged 8 to <18 years (mean 13.66 ±2.52 SD) were enrolled in this study. Tregs sorted from PBMC samples from 14 placebo and 19 Treg-treated patients were taken for bulk RNA-Sequencing at 6 time points (or fewer, depending on sample availability) before and after treatment. 17 of 19 of those treated with Tregs also had samples containing sorted expanded Tregs generated for infusion. C-peptide response and Treg fold-expansion were also measured for these patients.
Sample: lib77919
SAMN37397970 • SRS18883948 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7782643
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: To avoid batch effects, all samples underwent lysis, RT, and PCR on the same day. The double-stranded cDNA quality was tested on the Agilent Tapestation.
Runs: 1 run, 2.3M spots, 271.2M bases, 92.7Mb
Run# of Spots# of BasesSizePublished
SRR260633862,329,156271.2M92.7Mb2024-04-15

ID:
29494646

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