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SRX2488466: GSM2455282: Leucoraja_4_RNASeq; Leucoraja erinacea; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 21.7M spots, 6.5G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: RNASeq of molecular basis of ancestral vertebrate electroreception
show Abstracthide Abstract
Elasmobranch fishes, including sharks, rays, and skates, use specialized electrosensory organs called Ampullae of Lorenzini to detect extremely small changes in environmental electric fields. Electrosensory cells within these ampullae are able to discriminate and respond to minute changes in environmental voltage gradients through an as-yet unknown mechanism. Here we show that the voltage-gated calcium channel CaV1.3 and big conductance calcium-activated potassium (BK) channel are preferentially expressed by electrosensory cells in little skate (Leucoraja erinacea) and functionally couple to mediate electrosensory cell membrane voltage oscillations, which are important in the detection of specific, weak electrical signals. Both channels exhibit unique properties compared with their mammalian orthologues to support electrosensory functions: structural adaptations in CaV1.3 mediate a low voltage threshold for activation, while alterations in BK support specifically tuned voltage oscillations. These findings reveal a molecular basis of electroreception and demonstrate how discrete evolutionary changes in ion channel structure facilitate sensory adaptation. Overall design: Examination of gene expression in ampullary cells, ampullary canals, body skin, and liver from one adult Leucoraja erinacea skate prepared from poly A+ RNA using Illumina TruSeq Stranded mRNA Library Prep Kit
Sample: Leucoraja_4_RNASeq
SAMN06227241 • SRS1918403 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Tissues were removed, preserved in RNAlater solution at -20C, and RNA was harvested using Trizol reagent. Illumina TruSeq Stranded mRNA Library Sample Prep Kit (Cat#RS-122-2101) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2455282
Links:
Runs: 1 run, 21.7M spots, 6.5G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR517215221,685,0086.5G2.8Gb2017-03-09

ID:
3609518

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