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SRX2677155: GSM2552033: Input_for_H3K27_in_can_Rep2; Drosophila melanogaster; ChIP-Seq
1 ILLUMINA (Illumina MiSeq) run: 3.1M spots, 417.2M bases, 190.8Mb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide profiling of gene expression and transcription factors binding reveals new insights into the mechanisms of gene regulation during Drosophila spermatogenesis [ChIP-Seq]
show Abstracthide Abstract
To investigate the mechanisms of gene regulation during Drosophila spermatogenesis, we studied the effects of comr and can mutations on the chromatin of the cells in Drosophila testes by H3K27me3 ChIP-Seq. Overall design: ChIP-Seq of H3K27me3 histone modification in comr- and can-mutant testes of Drosophila melanogaster. We processed two biological replicates of every sample and corresponding input specimen.
Sample: Input_for_H3K27_in_can_Rep2
SAMN06647767 • SRS2075577 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: To perform H3K27me3 ChIP-seq, we used the True MicroChIP & MicroPlex Library Preparation™ Package (Diagenode), according to manufacturer’s recommendations. 400 adult testes of comr or can homozygotes were used as a starting material for two biological replicates. Abcam anti-H3K27me3 antibodies (#6002) were used for chromatin immunoprecipitation. Chromatin was sheared using BioRuptor instrument (Diagenode). DNA from precipitated material and input were used for library preparation using MicroPlex Library Preparation protocol. The libraries were sequenced on the Illumina MiSeq system.
Experiment attributes:
GEO Accession: GSM2552033
Links:
Runs: 1 run, 3.1M spots, 417.2M bases, 190.8Mb
Run# of Spots# of BasesSizePublished
SRR53820753,077,634417.2M190.8Mb2017-03-31

ID:
3862195

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