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SRX2745959: GSM2584520: AI55 Setd1b HOM (FD/FD; RC/+); Mus musculus; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 35.6M spots, 2.7G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Expression profile of hematopoietic stem and progenitor cells (HSPCs) after conditional deletion of the histone 3 lysine 4 (H3K4) methyltransferase Setd1b in mice
show Abstracthide Abstract
Loss of Setd1b in adult mice using both ubiquitous and hematopoietic-specific deletion strategies caused lethality arising from severe hematopoietic defects. To identify genes regulated by Setd1b in HSPCs we performed RNA-seq analysis of the LSK (Lin-, Sca+, Kit+) compartment in the bone marrow. Mice carrying heterozygous and homozygous conditional Setd1b alleles and Rosa26-Cre-ERT2 were treated with Tamoxifen for 6 days (4 days gavage - 3 days pause - 2 days gavage). Mice were sacrificed 3 days after the last treatment and RNA was isolated and processed for next generation sequencing. We found that Setd1b regulates key lineage specification components including Cebpa, Gata-1 and Klf-1. Overall design: HSPC (LSK) mRNA profiles of Setd1b control (heterozygous) and knockout (homozygous) littermates were generated 3 days after the last tamoxifen administration, in triplicates.
Sample: AI55 Setd1b HOM (FD/FD; RC/+)
SAMN06766407 • SRS2132326 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was isolated using the miRNeasy Micro Kit (Qiagen) according to the manufacturer’s protocol. Eluted RNA was reverse-transcribed and amplified using the SMARTer Stranded Total RNA-seq Kit – Pico Input Mammalian (Takara) following manufacturer's protocol.
Experiment attributes:
GEO Accession: GSM2584520
Links:
Runs: 2 runs, 35.6M spots, 2.7G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR545792810,060,395764.6M510.1Mb2018-06-26
SRR545792925,498,8321.9G1.2Gb2018-06-26

ID:
3954824

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