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SRX3096752: GSM2743362: HeLa_eBE-S3-3_1; Homo sapiens; OTHER
1 ILLUMINA (NextSeq 500) run: 4.5M spots, 1.3G bases, 562.6Mb downloads

Submitted by: NCBI (GEO)
Study: Enhanced base editing by co-expression of free uracil DNA glycosylase inhibitor
show Abstracthide Abstract
Even the latest generation of base editor (BE3) causes unwanted indels and non-C-to-T substitutions, compromising the fidelity of base editing outcome. Here we report a enhanced base editing system. The enhanced base edting system decreased the formation of unintended indels and C-to-A/C-to-G substitutions, and increased the frequency of desired C-to-T substitution, thereby improving both the accuracy and efficiency of base editing. Overall design: Examination of indels and base substitutions induced by the enhanced base editing system
Sample: HeLa_eBE-S3-3_1
SAMN07510777 • SRS2433498 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: For DNA, 72 hr after transfection, the genomic DNA was extracted from the cells with QuickExtractTM DNA Extraction Solution (QE09050, Epicentre). For DNA, DNA-seq libraries were prepared with Illumina TruSeq ChIP Sample Preparation Kit. Deep sequencing was performed on Illumina Hiseq 2500 and Hiseq X ten at CAS-MPG Partner Institute for Computational Biology Omics Core, Shanghai, China.
Experiment attributes:
GEO Accession: GSM2743362
Links:
Runs: 1 run, 4.5M spots, 1.3G bases, 562.6Mb
Run# of Spots# of BasesSizePublished
SRR59368024,491,3711.3G562.6Mb2017-08-29

ID:
4386457

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