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SRX3111461: GSM2748844: TTC_SC_450; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 107,779 spots, 32.3M bases, 13.9Mb downloads

Submitted by: NCBI (GEO)
Study: Divergent cell differentiation trajectory in normal and heterotopic ossified soft connective tissues
show Abstracthide Abstract
We used single-cell RNA sequencing and a gene knockout mice model to reveal the heterogeneity and differentiation trajectory of tendon derived cells in both physiological and pathoplogical conditons. Overall design: Wild type(WT) and Mkx-/- tail tendon cells derived from 4-week-old mice were captured on a high-throughput IFC microfluidic Fluidigm C1 system. Wells with no cell or more than one cells were excluded for further analysis, resulting in 227 WT tail tendon cells and 224 Mkx-/- tail tendon cells.
Sample: TTC_SC_450
SAMN07533803 • SRS2446543 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Single-cell capture, RNA extraction and cDNA synthesis were performed following the methods described in the Fluidigm protocol(PN 100-9886) The cDNA reaction products were quantified using the Qubit and were then diluted to a final concentration of 0.2 ng/ μl using C1 Harvest Reagent. The diluted cDNA reaction products were then converted into mRNA-seq libraries using the Nextera XT DNA Sample Preparation Kit (Illumina, FC-131-1096, -2001 and -2002) following the manufacturer’s instructions.
Experiment attributes:
GEO Accession: GSM2748844
Links:
Runs: 1 run, 107,779 spots, 32.3M bases, 13.9Mb
Run# of Spots# of BasesSizePublished
SRR5953087107,77932.3M13.9Mb2020-07-01

ID:
4405389

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