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SRX3447173: GSM2877819: Primordial_follicle_B26O; Homo sapiens; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 12.6M spots, 3.8G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome Landscape of Human Folliculogenesis Reveals Oocytes and Granulosa Cells Interactions
show Abstracthide Abstract
The dynamic transcriptional regulation and interactions of human germlines and surrounding somatic cells during folliculogenesis remains unknown. Using RNA-Seq analysis of human oocytes and corresponding granulosa cells (GCs) spanning five follicular stages, we revealed unique features in transcriptional machinery, transcription factor networks and reciprocal interactions in human oocytes and GCs that displayed developmental-stage-specific expression patterns. Notably, we identified specific gene signatures of two cell types in particular developmental stage that may reflect developmental competency and ovarian reserve. Additionally, we uncovered key pathways that may concert germline-somatic interactions and drive the transition of primordial-to-primary follicle which represents follicle activation. Thus, our work provides key insights into the crucial features of the transcriptional regulation in the stepwise folliculogenesis and offers important clues for improving follicle recruitment in-vivo and restoring fully competent oocytes in-vitro. Overall design: Transcriptome profiles of oocytes and granulosa cells from five follicle development stages were generated by deep sequencing using illumina Hiseq X10.
Sample: Primordial_follicle_B26O
SAMN08136605 • SRS2737124 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Each oocyte and 10 randomly selected granulosa cells were transferred into lysis buffer using a mouth pipette. The reverse transcription reaction was performed on the whole-cell lysate and terminal deoxynucleotidyl transferase was used to add a poly A tail to the 3′ end of the first-strand cDNAs, and then 20 cycles of PCR were performed to amplify the single-cell cDNA RNA libraries were prepared according to instructions of Kappa Hyper Prep Kit (Kappa Biosystems).
Experiment attributes:
GEO Accession: GSM2877819
Links:
Runs: 1 run, 12.6M spots, 3.8G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR635044212,645,9503.8G1.7Gb2018-11-20

ID:
4804620

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