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SRX3591596: GSM2942630: Nematostella ELAV positive cells ATACseq_rep2; Nematostella vectensis; ATAC-seq
1 ILLUMINA (NextSeq 500) run: 89.1M spots, 3.6G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis
show Abstracthide Abstract
We performed single-cell transcriptome analysis (using MARS-seq) in the cnidarian Nematostella vectensis. Additionally we performed bulk ATAC-seq experiments on wild-type specimens, as well as ELAV::mOrange reporter transgenic lines (separating ELAV+ and ELAV- cell populations, representing neurons and non-neurons, respectively). Overall design: Multiple animals (20-25) were dissociated and pooled before sorting single-cells for scRNAseq. 200,000 cells were used in bulk ATAC-seq experiments.
Sample: Nematostella ELAV positive cells ATACseq_rep2
SAMN08379114 • SRS2861577 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: ATAC-seq experiments were performed starting from 200,000 fresh cells, following the ATAC protocol originally described in Buenrostro et al. 2013 (10.1038/nmeth.2688)
Experiment attributes:
GEO Accession: GSM2942630
Links:
Runs: 1 run, 89.1M spots, 3.6G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR650290789,135,6493.6G1.3Gb2018-06-01

ID:
4977098

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