U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX3686696: GSM2994928: SOX21_Input; Homo sapiens; ChIP-Seq
1 ILLUMINA (HiSeq X Ten) run: 25.9M spots, 6.7G bases, 2.6Gb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide map of SOX21 occupancy in human embryonic stem cell-derived neural progenitor cells [ChIP-seq]
show Abstracthide Abstract
To understand how SOX21 regulates neural fate specification, we differentiated wild type and SOX21 knockout hESC into neural epithelial cells (NECs) using dual SMAD inhibition protocol. We collected cells at neural differentiation day 5 and performed SOX21 ChIP-seq to investigate the genome-wide binding profiles. Meanwhile, we also carried out b-catenin ChIP-seq in wild type and SOX21 knockout NECs to dissect the role of SOX21 in Wnt signaling inhibition, thus providing important information for the mechanism underlying SOX21's functions in early neural fate specification. Overall design: Examination of genome-wide binding profile of SOX21 in neural epithelial cells (NECs). Comparison of b-catenin occupies between wild type and SOX21 knockout NPCs.
Sample: SOX21_Input
SAMN08522246 • SRS2946713 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: HiSeq X Ten
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Neural epithelial cell lysates were clarified from sonicated nuclei and SOX21 complexes or b-catenin-DNA complexes were immunoprecipitated with SOX21 antibody (R&D AF3538) or b-catenin antibody (BD Biosciences, 610154), respectively. Protein A and G Magnetic Dynabeads were used to capture antibody-bound protein-DNA complexes. The ChIP-enriched DNA samples were treated with end-repair of the DNA, adding “A” bases to the DNA, ligating sequencing adapters to DNA fragments, amplifying adapter-modified DNA by PCR and gel purification for ChIPseq using NEBNext Ultra DNA Library Prep Kit for Illumina. Purified libraries were sequenced on Illumina HiSeq X-ten platforms.
Experiment attributes:
GEO Accession: GSM2994928
Links:
Runs: 1 run, 25.9M spots, 6.7G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR671325625,865,2696.7G2.6Gb2019-10-29

ID:
5092657

Supplemental Content

Search details

See more...

Recent activity