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SRX386359: GSM1278472: HC-A13-18; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 11.3M spots, 1.1G bases, 806.1Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: miR-155 plays a crucial role in ALS and is an immune therapeutic target [RNA-Seq]
show Abstracthide Abstract
Amyotrophic lateral sclerosis (ALS) is a paralytic degenerative disease of the nervous system. In the SOD1 mouse model of ALS we found loss of the molecular and functional microglia signature associated with pronounced expression of miR-155 in SOD1 mice. We also found increased expression of miR-155 in the spinal cord of ALS subjects. Genetic ablation of miR-155 increased survival in SOD1 mice and reversed the abnormal microglial and monocyte molecular signature. In addition, dysregulated proteins in the spinal cord of SOD1 mice that we identified in human ALS spinal cords and CSF were restored in SOD1G93A/miR155-/- mice. Treatment of SOD1 mice with anti-miR-155 SOD1 mice injected systemically or into the cerebrospinal fluid prolonged survival and restored the microglial unique genetic and microRNA profiles. Our findings provide a new avenue for immune based therapy of ALS by targeting miR-155. Overall design: Total RNA was isolated from whole lumbar spinal cord homogenate from healthy control donors without known neurologic diseases and sporadic and familial ALS.
Sample: HC-A13-18
SAMN02429402 • SRS510377 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol. RNAseq analysis was performed in Harvard genetic facility. Ribosomal reduction using Qiagen kit gene read rRNA depletion kit - http://www.qiagen.com/Products/Catalog/Assay-Technologies/Next-Generation-Sequencing/GeneRead-rRNA-Depletion-Kit#orderinginformation. Direction mRNA sequencing Integenix protocol - http://www.genome.med.harvard.edu/documents/illumina/IntegenX_Apollo324_mRNA_Seq_Protocol_10012012.pdf RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM1278472
Links:
External link:
Runs: 1 run, 11.3M spots, 1.1G bases, 806.1Mb
Run# of Spots# of BasesSizePublished
SRR104203111,278,9761.1G806.1Mb2014-11-24

ID:
555716

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