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SRX4384309: GSM3266921: DTR-PYR-926V; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 10.3M spots, 517M bases, 176.7Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptional profile of injured hearts treated with the cholinesterase inhibitor pyridostigmine (PYR) at Day 5
show Abstracthide Abstract
It has been shown that acetylcholine has anti-inflammatory properties. The aim of this study is to investigate the role of acetylcholine in cardiac inflammation. We used the diphtheria toxin (DT)-cardiomyocyte ablation model (DTR model) (Lavine et al., 2014 - PNAS) to induce cardiac injury (DT, 2 days, 2.5µg/kg, IP). Beginning one week prior to DT injury, mice were treated with vehicle (PBS, phosphate buffered saline) or the cholinesterase inhibitor pyridostigmine (PYR, 3mg/kg, SQ). Hearts were harvested at Day 5 post-DT-injury. Here, we provide the transcriptional profile of wild-type/PBS, wild-type/PYR, DTR/PBS and DTR/PYR hearts. Overall design: mRNA sequencing profiles were generated from 6 each of wild-type/PBS, wild type/PYR, DTR/PBS and DTR/PYR hearts on Illumina HiSeq 3000 instruments.
Sample: DTR-PYR-926V
SAMN09650256 • SRS3540511 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Hearts were removed and ventricular apexes were flash-frozen in liquid nitrogen. RNA was harvested using Trizol reagent. Polyadenylated RNA was isolated using oligo(dT) binding, followed by chemical fragmentation and preparation of non-strand-specific, single-end RNA-Seq libraries, as per Methods Mol Biol. 2015;1299:27-49, PMID 25836573.
Experiment attributes:
GEO Accession: GSM3266921
Links:
Runs: 1 run, 10.3M spots, 517M bases, 176.7Mb
Run# of Spots# of BasesSizePublished
SRR751421410,339,962517M176.7Mb2019-08-24

ID:
5954473

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