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SRX4725896: GSM3397508: EGLKO8; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 31.8M spots, 1.6G bases, 564.8Mb downloads

Submitted by: NCBI (GEO)
Study: The Transcriptional Regulator SnoN Promotes the Proliferation of Cerebellar Granule Neuron Precursors in the Postnatal Mouse Brain
show Abstracthide Abstract
Control of neuronal precursor cell proliferation is essential for normal brain development, and deregulation of this fundamental developmental event contributes to brain diseases. Typically, neuronal precursor cell proliferation extends over long periods of time during brain development. However, how neuronal precursor proliferation is regulated in a temporally specific manner remains to be elucidated. Here, we report that conditional knockout of the transcriptional regulator SnoN in cerebellar granule neuron precursors robustly inhibits the proliferation of these cells and promotes their cell cycle exit at later stages of cerebellar development in the postnatal mouse brain. In laser capture microdissection followed by RNASeq, designed to profile gene expression specifically in the external granule layer (EGL) of the cerebellum, we find that SnoN promotes the expression of cell proliferation genes and concomitantly represses differentiation genes in granule neuron precursors in vivo. Remarkably, bioinformatics analyses reveal that SnoN-regulated genes contain binding sites for the transcription factors N-myc and Pax6, which promote the proliferation and differentiation of granule neuron precursors, respectively. Accordingly, we uncover novel physical interactions of SnoN with N-myc and Pax6 in cells. In behavior analyses, conditional knockout of SnoN impairs cerebellar-dependent learning in a delayed eye-blink conditioning paradigm, suggesting that SnoN-regulation of granule neuron precursor proliferation bears functional consequences at the organismal level. Our findings define a novel function and mechanism for the major transcriptional regulator SnoN in the control of granule neuron precursor proliferation in the mammalian brain. Overall design: We deployed a laser captured microdissection (lcm) approach to focus our analyses of SnoN specifically in the EGL of the developing mouse cerebellum. The transcriptome of laser captured microdissected EGL from conditional SnoN knockout and control littermate mice were were measured using RNA-seq.
Sample: EGLKO8
SAMN10101914 • SRS3809691 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from cerebellum of P6 mice using Trizol (Invitrogen) according to the manufacturer's instructions. The EGL from the central lobules of P6 mice cerebellum was micro-dissected and RNA was extracted using RNeasy Plus Micro Kit with gDNA eliminator column. After Agilent BioAnalyzer quality control, intact RNA was used for library using NEBNext Ultra RNA library preparation kit for Illumina (E7530).
Experiment attributes:
GEO Accession: GSM3397508
Links:
Runs: 1 run, 31.8M spots, 1.6G bases, 564.8Mb
Run# of Spots# of BasesSizePublished
SRR788825131,766,6461.6G564.8Mb2018-12-13

ID:
6393766

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