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SRX4932751: GSM3445023: WT4; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 50M spots, 7.5G bases, 2.9Gb downloads

Submitted by: NCBI (GEO)
Study: Identification of a T cell lymphoma in plkcGAPDH transgénic mice (RNA-Seq)
show Abstracthide Abstract
Glyceraldehyde-3-phosphate-dehydrogenase (GAPDH) is emerging as a key player in T-cell development, function and cancer. Here we investigated the role of GAPDH in T-cell development/function by overexpressing GAPDH in the T-cell lineage. Aged mice developed: 1) splenomegaly, 2) enlarged lymph nodes, 3) lymphocyte-infiltrations in the liver and bone marrow. All showed an increase of strongly proliferating and clonal Tfh CXCR5+PD1highCD4+-T cells associated with germinal center B cells and inflammatory cytokine-release. Gene-set-expression-analysis confirmed that this lymphoma was equivalent to human angioimmunoblastic T-cell lymphoma (AITL). Mechanistically, GAPDH induced NF-?B pathway in the murine AITL in vivo inhibition of NF-?B combined with anti-PD1 increased mice survival and cancer immune response. GAPDH-dependent modulation of NF-?B in T-cells allowed to model AITL-disease and evaluate treatments. Overall design: mRNA profiles of lymphomas from plckGAPDH mice were generated by RNA sequencing (RNASeq), in triplicate, using Illumina GAIIx.
Sample: WT4
SAMN10319496 • SRS3985331 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from splenocytes of tumor developing plck-GAPDH mice and wt mice using the RNA extraction kit (Qiagen, Valencia, CA, USA) according to manufacturer's instructions. Truseq Stranded Total RNA Libraries were generated from 500ng of total RNAs using Truseq Stranded Total RNA kit (Illumina). Libraries were then quantified with Qubit and pooled. 4nM of this pool were loaded on a High Output Flowcell and sequenced on a NextSeq500 platform (Illumina) with 2x75bp paired-end chemistry.
Experiment attributes:
GEO Accession: GSM3445023
Links:
Runs: 1 run, 50M spots, 7.5G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR810599750,000,0007.5G2.9Gb2021-10-21

ID:
6634111

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