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SRX6457510: GSM3946506: 10x 10 cell lines Baselines; Homo sapiens; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 516.4M spots, 29.3G bases, 12.1Gb downloads

Submitted by: NCBI (GEO)
Study: Single-cell analysis of gene expression variation and phenotype switching in melanoma
show Abstracthide Abstract
We combine extensive profiling of single-cell gene expression (scRNA-seq of 39,263 cells) and chromatin accessibility applied to ten genetically-homogeneous, patient-derived melanoma cultures, to examine intra- and intertumoral phenotypic heterogeneity, to identify new cell states, and to track dynamic transitions at single-cell resolution. Overall design: scRNA-seq (10x Genomics Chromium Single Cell 3' Solution V2 Chemistry and Drop-seq) of human melanoma cell lines with and without perturbations (SOX10-KD) Bulk RNA-seq of human melanoma cell lines with and without perturbations (baselines, SOX10/EGR3/NFATC2 knockdown and THZ2 treatment) ATAC-seq of human melanoma cell lines (untreated).
Sample: 10x 10 cell lines Baselines
SAMN12306971 • SRS5117242 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Not Provided
Links:
Runs: 4 runs, 516.4M spots, 29.3G bases, 12.1Gb
Run# of Spots# of BasesSizePublished
SRR969943152,540,7091.3G531.1Mb2020-07-11
SRR969943252,540,7092.4G1Gb2020-07-11
SRR9699433205,650,8617.4G3.1Gb2020-07-11
SRR9699434205,650,86118.1G7.5Gb2020-07-11

ID:
8554142

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