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SRX6750643: GSM4042161: NH4+_plus_1; Bacillus velezensis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 18.8M spots, 5.6G bases, 2Gb downloads

Submitted by: NCBI (GEO)
Study: Bacillus velezensis LG37: Transcriptome profiling and functional verification of GlnK and NmtA in ammonia (NH4+) assimilation
show Abstracthide Abstract
not provided; requested Overall design: B. velezensis LG37 grown in a minimal medium containing 10 mmol/L NH4+-N (as treatment) and Gln-N (as control) and pelletized once reaching the late log phase (0.4 - 0.7 OD) samples were sequenced, each with three repetitions.
Sample: NH4+_plus_1
SAMN12619364 • SRS5300694 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bacteria were lysed by constantly grinding in the presence of liquid nitrogen with the total RNA extracted using TRIzol reagent (Invitrogen), and finally dissolved in 50 μL RNase-free water. The total RNA quality was evaluated after ribosomal RNAs were removed. The RNA was then fragmented and used as a template for a randomly primed PCR. Strand-specific cDNA libraries were prepared by standard techniques for subsequent Illumina sequencing (Illumina HiSeq 2000)
Experiment attributes:
GEO Accession: GSM4042161
Links:
Runs: 1 run, 18.8M spots, 5.6G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR1001246018,822,8935.6G2Gb2019-08-27

ID:
8893181

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